Summer2
1.2.2
Installation and Quickstart
Examples
Rationale
API Reference
Summer2
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Index
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B
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C
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D
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E
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F
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G
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H
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I
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J
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M
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O
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P
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Q
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R
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S
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T
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V
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W
A
add_computed_value_func() (summer2.model.CompartmentalModel method)
add_crude_birth_flow() (summer2.model.CompartmentalModel method)
add_death_flow() (summer2.model.CompartmentalModel method)
add_importation_flow() (summer2.model.CompartmentalModel method)
add_infection_density_flow() (summer2.model.CompartmentalModel method)
add_infection_frequency_flow() (summer2.model.CompartmentalModel method)
add_infectiousness_adjustments() (summer2.stratification.Stratification method)
add_replacement_birth_flow() (summer2.model.CompartmentalModel method)
add_transition_flow() (summer2.model.CompartmentalModel method)
add_universal_death_flows() (summer2.model.CompartmentalModel method)
adjust_population_split() (summer2.model.CompartmentalModel method)
AgeStratification (class in summer2.stratification)
B
BackendType (class in summer2.model)
C
Compartment (class in summer2.compartment)
CompartmentalModel (class in summer2.model)
compartments (summer2.model.CompartmentalModel attribute)
CrudeBirthFlow (class in summer2.flows)
D
DeathFlow (class in summer2.flows)
DEFAULT (summer2.solver.SolverArgs attribute)
derived_outputs (summer2.model.CompartmentalModel attribute)
deserialize() (summer2.compartment.Compartment static method)
E
enforce_multiply() (in module summer2.adjust)
enforce_wrapped() (in module summer2.adjust)
EULER (summer2.solver.SolverType attribute)
F
FAST (summer2.solver.SolverArgs attribute)
finalize() (summer2.model.CompartmentalModel method)
FUNCTION (summer2.flows.WeightType attribute)
G
get_computed_value_keys() (summer2.model.CompartmentalModel method)
get_default_parameters() (summer2.model.CompartmentalModel method)
get_derived_outputs_df() (summer2.model.CompartmentalModel method)
(summer2.model.ModelResults method)
get_flow_adjustment() (summer2.stratification.Stratification method)
get_input_parameters() (summer2.model.CompartmentalModel method)
get_matching_compartments() (summer2.model.CompartmentalModel method)
get_net_flow() (summer2.flows.CrudeBirthFlow method)
(summer2.flows.DeathFlow method)
(summer2.flows.ImportFlow method)
(summer2.flows.ReplacementBirthFlow method)
(summer2.flows.TransitionFlow method)
get_new_value() (summer2.adjust.Multiply method)
(summer2.adjust.Overwrite method)
get_object_graph() (summer2.model.CompartmentalModel method)
get_outputs_df() (summer2.model.CompartmentalModel method)
(summer2.model.ModelResults method)
get_runner() (summer2.model.CompartmentalModel method)
get_stratification() (summer2.model.CompartmentalModel method)
H
has_name() (summer2.compartment.Compartment method)
has_name_in_list() (summer2.compartment.Compartment method)
has_strata() (summer2.compartment.Compartment method)
has_stratum() (summer2.compartment.Compartment method)
I
ImportFlow (class in summer2.flows)
InfectionDensityFlow (class in summer2.flows)
InfectionFrequencyFlow (class in summer2.flows)
initial_population (summer2.model.CompartmentalModel attribute)
is_ageing() (summer2.stratification.Stratification method)
is_death_flow (summer2.flows.DeathFlow attribute)
is_match() (summer2.compartment.Compartment method)
is_strain() (summer2.stratification.Stratification method)
J
JAX (summer2.model.BackendType attribute)
M
ModelResults (class in summer2.model)
module
summer2.adjust
summer2.compartment
summer2.flows
summer2.model
summer2.solver
summer2.stratification
Multiply (class in summer2.adjust)
O
ODE_INT (summer2.solver.SolverType attribute)
outputs (summer2.model.CompartmentalModel attribute)
Overwrite (class in summer2.adjust)
P
PRECISE (summer2.solver.SolverArgs attribute)
PYTHON (summer2.model.BackendType attribute)
Q
query_compartments() (summer2.model.CompartmentalModel method)
query_flows() (summer2.model.CompartmentalModel method)
R
ReplacementBirthFlow (class in summer2.flows)
request_aggregate_output() (summer2.model.CompartmentalModel method)
request_computed_value_output() (summer2.model.CompartmentalModel method)
request_cumulative_output() (summer2.model.CompartmentalModel method)
request_function_output() (summer2.model.CompartmentalModel method)
request_output_for_compartments() (summer2.model.CompartmentalModel method)
request_output_for_flow() (summer2.model.CompartmentalModel method)
request_track_modelled_value() (summer2.model.CompartmentalModel method)
run() (summer2.model.CompartmentalModel method)
(summer2.model.ModelResults method)
RUNGE_KUTTA (summer2.solver.SolverType attribute)
S
serialize() (summer2.compartment.Compartment method)
set_baseline() (summer2.model.CompartmentalModel method)
set_default_parameters() (summer2.model.CompartmentalModel method)
set_derived_outputs_whitelist() (summer2.model.CompartmentalModel method)
set_flow_adjustments() (summer2.stratification.Stratification method)
set_initial_population() (summer2.model.CompartmentalModel method)
set_mixing_matrix() (summer2.stratification.Stratification method)
set_population_split() (summer2.stratification.Stratification method)
set_validation_enabled() (summer2.model.CompartmentalModel method)
SOLVE_IVP (summer2.solver.SolverType attribute)
solve_ode() (in module summer2.solver)
solve_with_euler() (in module summer2.solver)
solve_with_ivp() (in module summer2.solver)
solve_with_odeint() (in module summer2.solver)
solve_with_rk4() (in module summer2.solver)
SolverArgs (class in summer2.solver)
SolverType (class in summer2.solver)
STATIC (summer2.flows.WeightType attribute)
STOCHASTIC (summer2.solver.SolverType attribute)
StrainStratification (class in summer2.stratification)
Stratification (class in summer2.stratification)
stratify() (summer2.compartment.Compartment method)
stratify_with() (summer2.model.CompartmentalModel method)
summer2.adjust
module
summer2.compartment
module
summer2.flows
module
summer2.model
module
summer2.solver
module
summer2.stratification
module
T
times (summer2.model.CompartmentalModel attribute)
TransitionFlow (class in summer2.flows)
V
validate_population_split() (summer2.stratification.Stratification method)
W
WeightType (class in summer2.flows)
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